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The Database for Annotation, Visualization and Integrated Discovery
DAVID Bioinformatics Resources 6.8
Laboratory of Human Retrovirology and Immunoinformatics (LHRI)

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LHRI Publications

LHRI Publications

Google Scholar 2022 | 2021 | 2020 | 2019 | 2018 | 2017 | 2016
Last updated February 2022

2022 Publications
Chang, W.; Jiao, X.; Sui, H.; Goswami, S.; Sherman, B.T.; Fromont, C.; Caravaca, J.M.; Tran, B.; Imamichi, T. Complete Genome Sequence of Herpes Simplex Virus 2 Strain G. Viruses. 5 March 2022; 14(3):536. doi.org/10.3390/v14030536.
ACTIV-3/TICO Bamlanivimab Study Group*. Responses to a Neutralizing Monoclonal Antibody for Hospitalized Patients With COVID-19 According to Baseline Antibody and Antigen Levels : A Randomized Controlled Trial. Ann Intern Med. 2022 Feb;175(2):234-243. doi:10.7326/M21-3507. Epub 2021 Dec 21. [PubMed].
R. M. Oguariri, T. W. Brann, J. W. Adelsberger, Q. Chen, S. Goswami, A. R. Mele, T. Imamichi. S100A8 and S100A9, biomarkers of SARS-Cov2-infected patients, suppress HIV replication in primary macrophages. AIDS Research and Human Retroviruses. 19 Jan. 2022, doi:10.1089/AID.2021.0193. [PubMed]
H. Sui and T. Imamichi. A DNA pull-down assay with diversity forms of competitor for detecting or evaluating protein-DNA interactions. Methods Mol Biol. in DNA-Protein Interactions. Ed., Marcos Simoes-Costa. In press.

2021 Publications
J. Yang, M. Hao, M. A. Khan, M. T. Rehman, H. C. Highbarger, Q. Chen, S. Goswami, B. T. Sherman, C. A. Rehm, R. L. Dewar, W. Chang, T. Imamichi. A Combination of M50I and V151I Polymorphic Mutations in HIV-1 Subtype B Integrase Results in Defects in Autoprocessing. Viruses November 22; 13(11):2331. doi.org/10.3390/v13112331. [PubMed].
H. Sui, M.Hao, W. Chang, T. Imamichi. The role of Ku70 as a cytosolic DNA sensor in innate immunity and beyond. Frontiers in cellular and infectious microbiology October 21; 11:761983. doi.org/10.3389/fcimb.2021.761983 eCollection 2021. [PubMed].
T. Imamichi, JG. Bernbaum, S. Laverdure, J. Yang, Q. Chen, H. Highbarger, M. Hao, H. Sui, R. Dewar, W. Chang, HC. Lane. Natural Occurring Polymorphisms in HIV-1 Integrase and RNase Regulate Viral Release and Autoprocessing. Journal of Virology Sep. 9;95(23):e0132321. doi:10.1128/JVI.01323-21 (2021) [PubMed].
S. Laverdure, Z. Wang, J. Yang, T. Yamamoto, T. Thomas, T. Sato, K. Nagashima, T. Imamichi. Interleukin-27 promotes autophagy in human serum-induced primary macrophages via an mTOR- and LC3-independent pathway. Scientific Report Jul 21; 11:14898.doi: https://doi.org/10.1038/s41598-021-94061-3 (2021). [PubMed]
H. Sui, Q. Chen, T. Imamichi. Cytoplasmic-translocated Ku70 senses intracellular DNA and mediates interferon-lambda1 induction. Immunology Jul;163(3):323-337. doi: https://doi.org/10.1111/imm.13318.(2021). [PubMed]
S. Goswami, X. Hu, Q. Chen, J. Qiu, J. Yang, D. Poudyal, B.T. Sherman, W. Chang, and T. Imamichi. Profiles of microRNAs in Interleukin-27-induced HIV-Resistant T cells: Identification of a Novel Anti-Viral MicroRNA. J Acquir Immune Defic Syndr Mar 1; 86(3):378-387. doi: https://doi.org/10.1097/QAI.0000000000002565. (2021). [PubMed]
B.T. Sherman, X. Hu, K. Singh, L. Haine, A.W. Rupert, J.D. Neaton, J.D. Lundgren, T. Imamichi, W. Chang, H.C. Lane, ESPRIT, SMART and START Study Groups. Genome-wide association study of high-sensitivity C-reactive protein, D-dimer and Interleukin-6 levels in multi-ethnic HIV+ cohorts. AIDS Feb 2; 35(2):193-204. doi: https://doi.org/10.1097/QAD.0000000000002738. (2021). [PubMed]
T. Imamichi, S. Goswami, X. Hu, S. Laverdure, J. Yang, J. Qiu, Q. Chen, B.T. Sherman, W. Chang. MicroRNA Profiles in Monocyte-Derived Macrophages Generated by Interleukin-27 and Human Serum: Identification of a Novel HIV-Inhibiting and Autophagy-Inducing MicroRNA. International Journal of Molecular Sciences Jan 28; 22(3):1290. doi: https://doi.org/10.3390/ijms22031290. (2021). [PubMed]

2020 Publications
V. Avdoshina, M. Mahoney, S.F. Gilmore, ED. Wenzel, A. Anderson, S.L. Letendre, T. Imamichi, NO. Fischer, and I. Mocchetti. HIV influences microtubule associated protein-2: Potential early marker of HIV-associated neurocognitive disorders. AIDS Jun 1; 34(7):979-988. doi: https://doi.org/10.1097/QAD.0000000000002509. (2020). [PubMed]
H. Sui, Q. Chen, T. Imamichi, A pull-down assay using DNA/RNA-conjugated beads with a customized competition strategy: An effective approach to identify DNA/RNA binding proteins. MethodsX Apr 13; 7:100890. doi: https://doi.org/10.1016/j.mex.2020.100890. eCollection 2020.PMID: 32373481. (2020). [PubMed]
H. Imamichi, M. Smith, J.W. Adelsberger, T. Izumi, F. Scrimieri, B.T. Sherman, C.A. Rehm, T. Imamichi, A. Pau, M. Catalfamo and HC. Lane. Defective HIV-1 proviruses produce viral proteins in vivo. Proc. Natl Acad Sci USA Feb 18; 117(7):3704-3710.doi: https://doi.org/10.1073/pnas.1917876117. (2020). [PubMed]

2019 Publications
X. Hu, S. Goswami, J. Qiu, Q. Chen, S. Laverdure, B. T. Sherman and T. Imamichi. Profiles of Long Non-Coding RNAs and mRNA Expression in Human Macrophages Regulated by Interleukin-27. International Journal of Molecular Sciences Dec 9; 20(24). (2019). [PubMed]
H. Sui, J. Yang, X. Hu, Q. Chen, and T. Imamichi. siRNA containing a unique 5-nucleotide motif acts as a quencher of IFI16-mediated innate immune response. Molecular Immunology Oct; 114:330-340. (2019). [PubMed]
D. Poudyal, J. Yang, Q. Chen, S. Goswami, J. Adelsberger, S. Das, A. Herman, R. Hornung, T. Andresson, T. Imamichi. IL-27 posttranslationally regulates Y-box binding protein-1 to inhibit HIV-1 replication in human CD4+ T cells. AIDS Oct 1; 33(12):1819-1830. (2019). [PubMed]
X. Jiao, H. Sui, C. Lyons, B. Tran, B. Sherman, and T. Imamichi. Complete Genome Sequence of Herpes Simplex Virus 1 Strain McKrae. Microbiology Resource Announcements Sep 26; 8(39):e00993-19. doi: 10.1128/MRA.00993-19. (2019). [PubMed]
X. Jiao, H. Sui, C. Lyons, B. Tran, B. Sherman, and T. Imamichi. Complete Genome Sequence of Herpes Simplex Virus 1 Strain MacIntyre. Microbiology Resource Announcements Sep 12; 8(37):e00895-19. doi: 10.1128/MRA.00895-19. (2019). [PubMed]

2018 Publications
M. Sassi, G. Kutty, G.A. Ferreyra, L.R. Bishop, Y. Liu, J. Qiu, D.W. Huang, J.A. Kovacs. The Major Surface Glycoprotein of Pneumocystis murina Does not Activate Dendritic Cells. The Journal of Infectious Diseases Oct 5; 218(10):1631-1640.doi: 10.1093/infdis/jiy342. (2018). [PubMed]
D. Poudyal, A. Herman, J. Adelsberger, J. Yang, X. Hu, Q. Chen, M. Bosche, B.T. Sherman, and T. Imamichi. A novel microRNA, hsa-miR-6852 differentially regulated by Interleukin-27 induces necrosis in cervical cancer cells by downregulating the FoxM1 expression. Scientific Reports Jan 17; 8(1):900.doi: 10.1038/s41598-018-19259-4. (2018). [PubMed]

2017 Publications
S.P. Babu, Y.K. Chen, S. Bonne-Annee, J. Yang, I. Maric, T.G. Myers, T.B. Nutman, and A.D. Klion. Dysregulation of Interleukin 5 Expression in Familial Eosinophilia. Allergy Sep; 72(9):1338-1345. doi: 10.1111/all.13146. (2017). [PubMed]
H. Sui, M. Zhou, H. Imamichi, X. Jiao, B.T. Sherman, H.C. Lane, T. Imamichi. STING is an Essential Mediator of the Ku70-Mediated Production of IFN-Λ1 in Response to Exogenous DNA. Science Signaling Jul 18; 10(488):eaah5054.doi: 10.1126/scisignal.aah5054. (2017). [PubMed]
X. Hu, Q. Chen, B. Sowrirajan, M. Bosche, T. Imamichi, and B.T. Sherman. Genome-Wide Analyses of Microrna Profiling in Interleukin-27 Treated Monocyte-Derived Human Dendritic Cells Using Deep Sequencing: A Pilot Study. International Journal of Molecular Sciences Apr 28; 18(5):925. doi: 10.3390/ijms18050925. (2017). [PubMed]
B. Sowrirajan, Y. Saito, D. Poudyal, Q. Chen, H. Sui, S.S. DeRavin, H. Imamichi, T. Sato, D.B. Kuhns, N. Noguchi, H.L. Malech, H.C. Lane, and T. Imamichi. Interleukin-27 Enhances the Potential of Reactive Oxygen Species Generation from Monocyte-Derived Macrophages and Dendritic Cells by Induction of P47phox. Scientific Reports Feb 27; 7:43441.doi: 10.1038/srep43441. (2017). [PubMed]

2016 Publications
S. Swaminathan, J. Qiu, A.W. Rupert, Z. Hu, J. Higgins, R.L. Dewar, R. Stevens, C.A. Rehm, J.A. Metcalf, B.T. Sherman, M.W. Baseler, H.C. Lane, and T. Imamichi. Interleukin-15 (IL-15) Strongly Correlates with Increasing HIV-1 Viremia and Markers of Inflammation. PLoS One Nov 23; 11(11):e0167091. doi: 10.1371/journal.pone.0167091. (2016). [PubMed]
G. Kutty, A.S. Davis, G.A. Ferreyra, J. Qiu, D.W. Huang, M. Sassi, L. Bishop, G. Handley, B. Sherman, R. Lempicki, J.A. Kovacs, β-Glucans Are Masked but Contribute to Pulmonary Inflammation During Pneumocystis Pneumonia. Journal of Infectious Diseases Sep 1; 214(5):782-791.doi: 10.1093/infdis/jiw249. (2016). [PubMed]
L. Ma, C. Raley, X. Zheng, G. Kutty, E. Gogineni, B.T. Sherman, Q. Sun, X. Chen, T. Skelly, K. Jones, R. Stephens, B. Zhou, W. Lau, C. Johnson, T. Imamichi, M. Jiang, R. Dewar, R.A. Lempicki, B. Tran, J.A. Kovacs, and D.W. Huang. Distinguishing Highly Similar Gene Isoforms with a Clustering-Based Bioinformatics Analysis of Pacbio Single-Molecule Long Reads. BioData Mining Apr 5; 9:13. doi: 10.1186/s13040-016-0090-8. (2016). [PubMed]
J. Yang, NN. Diaz, J. Adelsberger, X. Zhou, R. Stevens, A. Rupert, J.A. Metcalf, M. Baseler, C. Barbon, T. Imamichi, R. Lempicki, and L.M. Cosentino. The Effects of Storage Temperature on PBMC Gene Expression. BMC Immunology Mar 15; 17:6. doi: 10.1186/s12865-016-0144-1. (2016). [PubMed]
L. Ma, Z. Chen, D.W. Huang, G. Kutty, M. Ishihara, H. Wang, A. Abouelleil, L. Bishop, E. Davey, R. Deng, X. Deng, L. Fan, G. Fantoni, M. Fitzgerald, E. Gogineni, J.M. Goldberg, G. Handley, X. Hu, C. Huber, X. Jiao, K. Jones, J.Z. Levin, Y. Liu, P. Macdonald, A. Melnikov, C. Raley, M. Sassi, B.T. Sherman, X. Song, S. Sykes, B. Tran, L. Walsh, Y. Xia, J. Yang, S. Young, Q. Zeng, X. Zheng, R. Stephens, C. Nusbaum, B.W. Birren, P. Azadi, R.A. Lempicki, C.A. Cuomo, and J.A. Kovacs. Genome Analysis of Three Pneumocystis Species Reveals Adaptation Mechanisms to Life Exclusively in Mammalian Hosts. Nature Communications Feb 22; 7:10740. doi: 10.1038/ncomms10740. (2016). [PubMed]
T. Yoshimura, T. Imamichi, J.M. Weiss, M. Sato, L. Li, A. Matsukawa, J.M. Wang, Induction of Monocyte Chemoattractant Proteins in Macrophages Via the Production of Granulocyte/Macrophage Colony-Stimulating Factor by Breast Cancer Cells. Frontiers in Immunology Jan 20; 7:2. doi: 10.3389/fimmu.2016.00002. (2016). [PubMed]
D.W. Huang, C. Raley, M.K. Jiang, X. Zheng, D. Liang, M.T. Rehman, H.C. Highbarger, X. Jiao, B. Sherman, L. Ma, X. Chen, T. Skelly, J. Troyer, R. Stephens, T. Imamichi, A. Pau, R.A. Lempicki, B. Tran, D. Nissley, H.C. Lane, and R.L. Dewar. Towards Better Precision Medicine: Pacbio Single-Molecule Long Reads Resolve the Interpretation of HIV Drug Resistant Mutation Profiles at Explicit Quasispecies (Haplotype) Level. Journal of Data Mining in Genomics & Proteomics Jan; 7(1):182. doi: 10.4172/2153-0602.1000182. (2016). [PubMed]
L.R. Bishop, M.S. Lionakis, M. Sassi, P. M. Murphy, X. Hu, D.W. Huang, B. Sherman, J. Qiu, J. Yang, R.A. Lempicki, J.A. Kovacs. Characterization of chemokine and chemokine receptor expression during Pneumocystis infection in healthy and immunodeficient mice. Microbes and Infection Sep; 17(9):638-650.doi: 10.1016/j.micinf.2015.05.008. (2015). [PubMed]

 Please cite Nature Protocols 2009; 4(1):44 & Nucleic Acids Res. 2009;37(1):1 within any publication that makes use of any methods inspired by DAVID.
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